Tissue expression of ARF6 - Staining in colon - The Human Protein Atlas

ARF6

TISSUE

SUBCELL

CELL LINE

CANCER

GENE/PROTEIN ANTIBODY/ANTIGEN

TISSUE ATLAS PRIMARY DATA COLON


Dictionary
	Colon

COLON - IHC ? »
The detailed normal tissue page shows images of the stained tissue, together with antibody staining/expression level of the cell types. If a knowledge-based annotated protein expression is provided, this is reported for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID. Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification. The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image. For histological reference, view colon in the histological dictionary.

Antibody staining	Antibody CAB002778
Endothelial cells	Not detected
Glandular cells	High
Peripheral nerve/ganglion	Low

COLON - RNAseq ? »
The RNAseq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNAseq analysis. On top the transcript layout for all coding and non-coding transcripts of the gene, with introns scaled down by a factor 20, is shown. Untranslated regions (UTRs) of protein-coding transcripts are colored gray. Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. FPKM (Fragments Per Kilobase of exon per Million fragments mapped) values give a quantification of the gene abundance which is comparable between different genes and samples. The FPKM is calculated as the sum of FPKMs of all protein-coding transcripts. The plots show the mapped read coverage along all exons and introns of the gene, thereby revealing which exons are expressed and at what relative levels. The levels are normalized by total library size and scaled to fit the highest peak of all samples to the height of the plot. Thus these plots should not be used to compare abundances between different samples or genes, but rather as an indication of which transcripts are expressed and as a quality control.

Male, age 54	Sample 1 FPKM: 45.0 Cell types% Glandular cells: 65 Smooth muscle cells: 10 Other cell types: 25
Female, age 57	Sample 2 FPKM: 55.5 Cell types% Glandular cells: 40 Smooth muscle cells: 5 Other cell types: 55
Male, age 80	Sample 3 FPKM: 60.5 Cell types% Glandular cells: 55 Smooth muscle cells: 5 Other cell types: 40
Male, age 68	Sample 4 FPKM: 59.4 Cell types% Glandular cells: 35 Smooth muscle cells: 10 Other cell types: 55
Female, age 68	Sample 5 FPKM: 40.3 Cell types% Glandular cells: 25 Smooth muscle cells: 5 Other cell types: 70
Female, age 61	Sample 6 FPKM: 30.9 Cell types% Glandular cells: 5 Smooth muscle cells: 65 Other cell types: 30
Male, age 80	Sample 7 FPKM: 48.2 Cell types% Glandular cells: 15 Smooth muscle cells: 20 Other cell types: 65

The Human Protein Atlas project is funded by the Knut & Alice Wallenberg foundation.